I had a nice discussion with the dealer.
Bottom line is basically this: try not to use it.
Nissan are (as all manufacturers except maybe Great Wall, who would be trying desperately to find a way to replace their foil bodywork with something a little more substantial - see p8 of The Open Road) evaluate biodiesel in their engines.
Not that long ago, the government introduced legislation that required the manufacturers to take steps to reduce sulphur, sulphate, particulate and NOx (nitrogen oxide, dioxide etc) emissions. For this reason, we now have ULSD (Ultra Low Sulphur Diesel) and more cars with DPFs (even things like the VW Jetta have DPFs now).
In order to accomodate the DPF, they had to work out how to clean it. The easiest way to achieve this without significant expense (in the relatively small $ market that our Navaras belong to) was to add pressure differential sensors before and after the DPF and when there was enough of a difference, the ECU would activate the injectors during the exhaust stroke while the exhaust valve was open (ie after the piston had reached BDC), in order to send some unburnt fuel in to be caught by the DPF.
On the next ignition stroke, that fuel would ignite and burn off the soot. It's not a large amount of fuel that's squirted in, by the way - it's miniscule, but it's enough to do the job as long as the engine has enough RPM to maintain flow through that area of the exhaust.
Okay, so we're stuck with DPFs. Biodiesel is causing them some concern, because it can cause significant damage through its corrosive nature and vehicles that are using biodiesel need to have certain changes made to prevent problems. You are also limited to where you can take a biodiesel-powered vehicle - because biodiesel waxes easily at lower temperatures, alpine areas are pretty much off-limits for the moment until the biodiesel makers can overcome this.
I think a more important point that was touched on but not spoken aloud about is economy and the usage figures that we ought to be able to get. Because biodiesel has a lower calorific value than diesel, it doesn't produce as much energy during combustion and in order to achieve the same driving results (eg tow x kilograms for y kilometres at z km/h) you're going to use more fuel.
Nissan are investigating biodiesel, though, because they can see the writing on the wall as well. Nissan will inform its users when and if things need to be done in order to make use of the fuel.
As for using biodiesel now - I was advised that if I had the choice of using it, or using straight petroleum-based diesel, I should use the petroleum based fuel, although the 2% mix served by Caltex should have next to no effect or impact on the vehicle. I was told that the recommended fuel was Shell diesel - but I do think that's at least partially personal preference, too.
So there you have it. Try to not use the higher blends, but don't worry about minor blends like 2%.