It's a very odd thing to happen.
In a manual with the clutch pedal released (and assuming a properly-working clutch) one revolution of the engine becomes one revolution of the gearbox input shaft. This then causes the final output to turn a fix number of times and that turns the diff and axles. 10 revolutions of the engine turns everything 10 times as much etc etc.
When we're talking speed, every revolution of the engine translates to a number of revolutions of the rear wheels. If you change the wheel size UP, every revolution of those wheels takes the car a little further.
That's why people are so confused by the airbox change causing this. The drive train is a fixed thing, it changes when you change gears but those gear ratios are static for the life of your car (with that gearbox & diff). Changes can happen with tyre change but to change a few hundred RPM like you've experienced, it'd be a massive tyre size change.
It's one of those weird ones. I've no idea what caused it and I'm not going to even try explaining it. I might call Mr Mulder though!
yea i got no idea,all i know is they changed.my brain is pre occupied trying to understand whats going on with my diff atm haha