The error is listed but still doesn't make sense. Air conditioning doesn't have anything to do with fuel. My guess is that if the fuel filter is fairly new**, there's a poor electrical connection somewhere under the bonnet and I'd suggest you unplug and replug the following items (do them one at a time, all you're really doing here is cleaning the contacts - you are NOT removing these devices!) :
* Fuel pump
* SCV (on the fuel pump)
* Fuel rail pressure sensor
* Air conditioning pressure sensor (near the battery on the refrigerant line)
* Engine coolant temp sensor (upper left side on front of engine for YD25)
I'd also check and clean the battery terminals (because that can cause odd things to happen) and there's no harm in finding the ECU earth (engine bay right hand side near the ECU), removing it and giving it a good clean.
They're the items mostly responsible for what's happening. There are some relays in the distribution boxes that are involved as well, you might consider popping the lids off and doing a re-seat of each.
** Even a new filter can be "attacked" by dirty fuel and start causing problems.