It's possible that they caused the damage - to change the flywheel, you need to separate engine from gearbox and unless they pulled the engine out, they would have removed the rear drive shaft and SHOULD HAVE removed the front drive shaft. It's possible that they removed the rear, forgot that it was a 4WD, and the front drive shaft fell out and when it hit the ground, they remembered that it isn't a Toyota Corolla.
You could look on the front drive shaft for dings, but $10 says that even if he hasn't covered them up and they're there, he could find a reasonable excuse for them.
I guess that's a good reason for taking the vehicle to someone that realises that 4WD vehicles drive both ends of the car? Naturally this guy would KNOW it (especially now!) but a 4WD specialist (while they might charge you a little more) would have not made a mistake like that, and you would more safely assume that the uni failure was a coincidence rather than a mistake that's being covered up.
Of course, there's going to be 4WD specialists that make mistakes as well, I'm just betting that there's less of them than the other guys.