Exactly as Bods says. Fuses protect cables to prevent fires - if a device needs a fuse, it'll have one of its own. If you're running cables around the place, here's my rule for it:
The cable run should START with a fuse/breaker as close as possible to the source of the power.
The actual electrical arrangement in the above drawing is also good. The cables have to be heavy enough to not have a lot of voltage drop - and you HAVE to be aware that a simple isolator will hardly ever allow your aux battery to fully charge.